Without doubt the most important way to train a Bonsai is to prune it on a regular basis. Essentially, there are two different techniques: maintenance-pruning, to maintain and refine the existing shape of a Bonsai - and structural-pruning, which involves more rigorous pruning to give a tree its basic shape or style.

Before discussing both techniques in more detail it is useful to look at some background information on how trees grow. This will help us understand how to prune Bonsai trees most efficiently.

Trees have a natural tendency to distribute growth to the top (and to a lesser extent outer parts of branches) which is called ‘apical dominance’. This natural mechanism encourages trees to grow higher in order to prevent them from being shaded out by competing trees. By distributing growth to the top and outer edges the tree’s inner and lower branches will eventually die, while top branches grow out of proportion; two effects not desirable for the design of Bonsai trees.

This basic background reveals the importance of pruning as a technique to counter apical dominance. Countering apical dominance is achieved by pruning the top and outer portions of a tree more thoroughly, forcing the tree to redistribute growth to the inner and lower parts.


Pruning a Ficus bonsai 

Pruning a Ficus Bonsai


Part 1: Bonsai maintenance pruning

The goal of maintenance pruning is to maintain and refine the shape of a tree. As explained above, trees will concentrate most growth on the top and outer parts of the tree; it is important to prune these growth areas regularly in order to encourage growth closer to the inner parts of the tree.


When to prune Bonsai?

Maintenance pruning can be done throughout the growth season, usually March to September.



As mentioned previously, maintenance pruning is required to maintain a trees' shape. To do so, simply prune branches/shoots that have outgrown the intended canopy-size/shape using twig shears or a normal cutter. Using the right Bonsai tools will help significantly. Don't be afraid to prune your Bonsai; it is important, especially in the outer and top areas, to prune regularly in order to force the tree to distribute growth more evenly and develop a dense foliage.

Pruning Bonsai trees is one of the topics in our online Bonsai course, made specifically for beginners. For more information and a free lesson, see the Bonsai Beginners Course.

As opposed to deciduous trees, pine trees and some conifers should be pinched by hand. Using scissors to prune some species of conifers would lead to dead brown foliage at the cuttings. To prevent this from happening hold the tip of the shoot between your thumb and pointing finger and carefully pull it away; the shoot will snap at its weakest point and no brown ends will appear. Different species need different maintenance regarding pruning and pinching; some even need a combination of both. Please consult our species guides for information per tree species.


Pruning a pine (wrong)

Pruning a pine (incorrect)

Pinching a pine (correct)

Pinching by hand (correct)


Another method of Bonsai pruning is defoliation, which involves removing leaves of deciduous trees during the summer to force the tree to grow new leaves. This technique ultimately leads to a reduction in leaf size and an increase in ramification. For more information check the defoliation page.


Part 2: Structural Bonsai pruning

To give a tree its basic shape often involves pruning large branches. Deciding on which branches should stay and which ones should be removed can be difficult, not only because it is an irreversible action but also because it is part of deciding how the tree will look like. Before learning more about the techniques used for pruning Bonsai, you might want to take a look at the Bonsai progressions part of this website, where you will find examples of experienced Bonsai growers structure-pruning nursery stock.



Overall, the early spring and in some cases late autumn is the right time to structure-prune a tree (just before and after the growth season). In the tree species section you can check the specifics on your particular tree, a Ficus Bonsai needs different timing from a Juniper Bonsai for example.



Place the tree on a table at eye-level; first step is to remove all the dead wood from the tree. Now take some time to observe your tree and decide which branches do not fit the desired design and will need to be removed. A few guidelines are shown in the image below, but deciding on the future design of your tree is a creative process, not necessarily bound by 'rules'. The Bonsai styles page can help.


Pruning a Bonsai tree illustration

Pruning a Bonsai tree illustration; grey branches can be removed. Ultimately, pruning is not about following strict rules, but about establishing the best design for your tree. This illustration only serves to provide some general guidelines.


Pruning thick branches will result in creating ugly scars on the tree, but by using a special concave cutter you will reduce this effect significantly because of the indentation it makes when cutting off the branch.

A healthy tree should have no problem coping with pruning up to 1/3 of the trees foliage. Some theories prescribe to cut/remove an equal percentage of roots after a tree has been styled. Most experts however agree on performing only one big maintenance per time (or even once a year). This would mean that you structure-prune this spring and wait with repotting until the next spring (when the tree has fully recovered from the structure-pruning). More details about pruning roots can be found at the root flare (Nebari) page.

Finally, it is advisable to seal large cuttings with wound paste, available at most (online) Bonsai shops. The paste protects the wounds against infections and helps the tree to heal faster. Again, using the right Bonsai tools will help significantly.