your clay is full of nutrients. Clay is the best in keeping nutrients. So your plant gets loads of them.
... but the tree gets much more nutrients in the canister so should grow even larger.
The theory that they grow bigger in nature because they need to search for food and that they don't grow large in canisters because they have everything they need obviously doesn't apply to vegetables - they grow much larger when you fertilise.
I asked this question to biologists and they do not have a clue.
They have more of everything in canisters, so my theory is, that they can feel they are contained and adjust to this.